Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIDTFKVKWFKRGMSLLVLILVFFLGLGFGQMGNSSQSKDRPKQTATKKTRTNTITQTQVKEFLVAYYTKKDLEENRNRYKDYMTEGLYNATISEENKAQNQAYRGFVVNFEFQDANIYIDQVHKQVICEVTYTNDLLQKKNNKDGAQIGVVNHTTIQLAYTKLNGKYLINQMSTILLTDSANPSEETESYGAIAPSNTKD |
2GOM Chain:A ((105-165)) | ----------------------------------------------------------------------IKKEQKLIQAQNLVREFEKTHTVSAHRKAQKAVNL---VSFEYKVKKMVLQERIDNVLKQGLVR------------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2GOM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 10829 for 395 contacts (27.4/contact) +
2D Compatibility (PS) -6354 + (NN) 93 + (LL) 8996
1D Compatibility (HY) -1600 + (ID) 550
Total energy: 11414.0 ( 28.90 by residue)
QMean score : 0.268
|
|
|