Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQLNQRQERIIDIIKQFQPITGELIAEKLGVTRAALRSDLAVLSMLGIIDAKPKVGYFYLGQYHASIGTSHFEKMTVSEIMGI-PLTVHQKDSVYDVIVHIFMEDAGCAFILDDDDFLCGVVSRKDLLKTSIGGG-DLSKMPIGMVMTRMPHVTTVLENESLFAAADKLVSRKVDSLPVVRHDKQYPEKFKVIGKLSKTILASLFLEIRDY
1PVM Chain:A ((7-133))
------------------------------------------------------------------------MFMRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRK--PIPKVKSDYDVKDVAAYLSENGLERCAVVDDPG------RVVGIVTLTDLSRYLSRASIT
General information:
TITO was launched using:
RESULT:
Template:
1PVM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89471 for 936 contacts (-95.6/contact) +
2D Compatibility (PS) -13188 + (NN) -455 + (LL) 6412
1D Compatibility (HY) -8000 + (ID) 1350
Total energy: -106052.0 ( -113.30 by residue)
QMean score : 0.485
(partial model without unconserved sides chains):
PDB file :
Tito_1PVM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PVM-query.scw
PDB file :
Tito_Scwrl_1PVM.pdb
: