Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIEITWTVKYITEFIATAFLIILGNGAVANVDLKGTK--------------GNNSGWIIIAIGYGLGVMMPALMFGNVSGNHINPAFTLGLAFSGLFPWAHVGQYILAQILGAMFGQLVVVMVYQPYFVKTENPNHVLGSFSTISALDDGQKSSRKAAYINGFLNEFVGSFVLFFGALALTKNYFGVELVGKLVQAGYDQTTAATRISPYVTGSLAVAHLGIGFLVMTLVASLGGPTGPALNPARDLGPRIVHRLLPKQILGQAKEDSKWWYAWVPVLAPIVASILAVALFKLLYL |
2F2B Chain:A ((2-244)) | ---VSLTKRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAFGFAIAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGIGAATVG------GLGATAPFPG-I-------SYWQAMLAEVVGTFLLMITIMGIAVDERA---------------------------PKGFAGIIIGLTVAGIITTLGNISGSSLNPARTFGPYLNDMIFA-G-------TDLWNYYSIYVIGPIVGAVLAALTYQYLTS |
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General information:
TITO was launched using:
| RESULT:
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Template: 2F2B.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -163644 for 2125 contacts (-77.0/contact) +
2D Compatibility (PS) -23800 + (NN) -7850 + (LL) 3588
1D Compatibility (HY) -18800 + (ID) 3500
Total energy: -214006.0 ( -100.71 by residue)
QMean score : 0.276
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