Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLVGKEIIEFSAQAYHDGKFITVTNEDVKGKWAVFCFYPADFSFVCPTELGDLQEQYETLKSLDVEVYSVSTDTHFVHKAWHDDSDVVGTITYPMIGDPSHLISQGFDVLGQD-GLAQRGTFIIDPDGVIQMMEINADGIGRDASTLIDKVRAAQYIRQHPGEVCPAKWKEGAETLTPSLDLVGKI
1YF0 Chain:B ((1-165))
-SLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFIHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHPGEVC---------------------
General information:
TITO was launched using:
RESULT:
Template:
1YF0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95615 for 1246 contacts (-76.7/contact) +
2D Compatibility (PS) -18229 + (NN) -10530 + (LL) 1352
1D Compatibility (HY) -19200 + (ID) 4700
Total energy: -146922.0 ( -117.91 by residue)
QMean score : 0.513
(partial model without unconserved sides chains):
PDB file :
Tito_1YF0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YF0-query.scw
PDB file :
Tito_Scwrl_1YF0.pdb
: