Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKILAACGAGVNSSHQIKDAIETQLGDRGYNVHCDAVMVKDITEE----MVNKYDIFTPIAKTDL--GF-NVPIPVVEAGPILYRIPVMSEPVFTALEQVIKEHNLS
2KYR Chain:A ((7-105))
---ALCACPMGLAHTFMAAQALEEAAVEAGYEVKIETQGADGIQNRLTAQDIAEATIIIHSVAVTPEDNERFESRDVYEITLQDAIKN--AAGIIKEIEEMIASEQQ-
General information:
TITO was launched using:
RESULT:
Template:
2KYR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58137 for 712 contacts (-81.7/contact) +
2D Compatibility (PS) -9377 + (NN) -1412 + (LL) 920
1D Compatibility (HY) -400 + (ID) 750
Total energy: -69156.0 ( -97.13 by residue)
QMean score : 0.500
(partial model without unconserved sides chains):
PDB file :
Tito_2KYR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KYR-query.scw
PDB file :
Tito_Scwrl_2KYR.pdb
: