Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTAPTGTSATTTRPWTPRIATQLSVLACAAFIYVTAEILPVGALSAI-ARNLRVSVVLVGTLLSWYALVAAVTTVPLVRWTAHWPRRRALVVSLVCLTVSQLVSALA-----PNFAVLAAGRVLCAVTHGLLWAVIAPIATRLVPPSHAGRATTSIYIGTSLALVVGSPLTAAMSL-----MWGWRLA-------------AVCVTGAAAAVALAARLALPEMVLRADQLEHVGRRARHHRNPRLVKVSVLTMIAVTGHFVSYTYIVVIIRDVVGVRGPNLAWLLAAYGVAGLVSVPLVARPLDRWPKGAVIVGMTGL-TAAFTLLTALAFGER---HTAATALLGTGAIVLWGALATAVSPMLQSAAMRS------------------GGDDPDGASGLYVTAFQIGIMAGALLGGLLYERS--LAMMLTASAGLMGVALFGMTVSQHLFENPTLSPGDG |
| 4U4V Chain:A ((58-452)) | ------------------------------------------VAVNLPKVGFNFTTDQLFMLTALPSVSGALLRVPYSFMVPIFGGRRWTAFSTGILIIPCVWLGFAVQDTSTPYSVFIIISLLCGFAGA-NFASSMANISFFFPKQKQGGALGLNGGLGNMGVSVMQLVAPLVVSLSIFAVFGSQGVKQPDGTELYLANASWIWVPFLAIFTIAAWFGMNDLAT-----------LPVLKRGHLWIMSLLYLATFGSFIGFSAGFAMLSK--TQFPDVQILQYAFFGPFIGALARSAGGALSDRLGGTRVTLVNFILMAIFSGLLFLTLPTD-QGGSFMAFFAVFLALFLTAGLGSGSTFQMISVIFRKLTMDRVKAEGGSDERAMREAATDTAAALGFISAIGAIGGFFIPKAFGSSLALTGSPVGAMKVFLIFYIACVVI------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4U4V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -352147 for 2891 contacts (-121.8/contact) +
2D Compatibility (PS) -34763 + (NN) -5766 + (LL) 4944
1D Compatibility (HY) -7600 + (ID) 2000
Total energy: -397332.0 ( -137.44 by residue)
QMean score : 0.209
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