Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLGQPTRAQLAALVDHTLLKPETTRADVAALVAEAAELGVYAVCVSPSMVPVA---VQAGGVRVAAVTGFPSGKHVSSVKAHEAAAALASGASEIDMVIDIGAALCGDIDAVRSDIEAVRAAAAGAVLKVIVESAVLLGQSNAHTLVDACRAAEDAGADFVKTSTGCHPAGGATVRAVELMAETVGPRLGVKASGGIRTAADAVAMLNAGATRLGLSGTRAVLDGLS
3NGJ Chain:C ((20-238))
--GSMDKATLAKYIDHTLLKADATEEQIRKLCSEAAEYKFASVCVNPTWVPLCAELLKGTGVKVCTVIGFPLGATPSEVKAYETKVAVEQGAEEVDMVINIGMVKAKKYDDVEKDVKAVVDASGKALTKVIIECCYLTNEEK----VEVCKRCVAAGAEYVKTSTG-FGTHGATPEDVKLMKDTVGDKALVKAAGGIRTFDDAMKMINNGASRIGASAGIAILNGI-
General information:
TITO was launched using:
RESULT:
Template:
3NGJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -145653 for 1952 contacts (-74.6/contact) +
2D Compatibility (PS) -24769 + (NN) -17371 + (LL) 828
1D Compatibility (HY) -18400 + (ID) 4850
Total energy: -210215.0 ( -107.69 by residue)
QMean score : 0.553
(partial model without unconserved sides chains):
PDB file :
Tito_3NGJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NGJ-query.scw
PDB file :
Tito_Scwrl_3NGJ.pdb
: