Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTKSLPGVADLRLGANHPRMWTRRVQGTVVNVGVKVLPWIPTPAKRILSAGRSVIIDGNTLDPTLQLMLSTSRIFGVDGLAVDDDIVASRAHMRAICEAMPGPQIHVDVTDLSIPGPAGEIPARHYRPSGGGATPLLVFYHGGGWTLGDLDTHDALCRLTCRDADIQVLSIDYRLAPEHPAPAAVEDAYAAFVWAHEHASDEFGALPGRVAVGGDSAGGNLSAVVCQLARD---KARYEGGPTPVLQWLLYPRTDFTAQTRSMGLFGNGFLLTKRDIDWFHTQYLRDSDVDPADPRLSPLLAESLSGLAPALIAVAGFDPLRDEGESYAKALRAAGTAVDLRYLGSLTHGFLNLFQLGGGSAAGTNELISALRAHLSRV |
3AIM Chain:B ((41-299)) | -------------------------------------------------------------------------------ASVEE----IRSLFKQFSSLTPREEVG-KIEDITIPGSETNIKARVYYPKTQGPYGVLVYYHGGGFVLGDIESYDPLCRAITNSCQCVTISVDYRLAPENKFPAAVVDSFDALKWVYNN-SEKFNGKYG-IAVGGDSAGGNLAAVTAILSKKENIKLKY--------QVLIYPAVSFDLITKSLYDNGEGFFLTREHIDWFGQQYLR-SFADLLDFRFSPILAD-LNDLPPALIITAEHDPLRDQGEAYANKLLQSGVQVTSVEFNNVIHGFVSFF------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3AIM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -136110 for 2239 contacts (-60.8/contact) +
2D Compatibility (PS) -27596 + (NN) -14905 + (LL) 6656
1D Compatibility (HY) -19600 + (ID) 5600
Total energy: -197155.0 ( -88.05 by residue)
QMean score : 0.475
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