Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MFKSLHQYAHVFSRLSLFGLAFAAAAQAQSQSLTVISFGGATKAAQEQAYFKPFERSGGGQVVAGEYNGEMAKVKAMVDVGKVSWDVVEVESPELLRGCDEGLFERLDPARFGDPAQFVPGTF---------SECGVATYVWSMVMAYDSTKLARAPQSWADFWNVREFPGKRGLRKGAKYTLEVALLADGVKAEDLYKVLATPEGV-SRAFAKLDQLKPNI-QWWEAGAQPPQWLAAGDVVMSAAYNGRIAAAQK--EGVKLAIVWP--G-SLYDPEYWAVVKGTPNKALAEKFIAFASQPQTQKVFSEQIPYGPVHKGTLALLPKTVQ-EALPTAPANLEGARAVDAEFWVDHGEELEQRFNAWAAR |
| 2V84 Chain:A ((25-343)) | ------------------------------DVLYLYNWTY----YTPTSLIKKFEQQYNVQVVYDDY-ASNEDMFAKLSIGASGYDLVVPSGDFVSIMKRKHLLEKIDLSKIPNVQ-FIKESVRARIAYDPKMEYSVPYYLGAAGIAVNKKAVPSYARTWSIFSRKD-LAYRMSMMDDMREVMGAALASLGYNVNT----KNEQ-ELAQAAILVTDHWKPNLVKFD--SDGYAKSFASGDFVVAHGFAEAFFAETPEAMHEHIDFFIPQDVASPVYVDSFCIPKGARNRDLAHAFINFFLEPAHYAEFLDTFGFPSTIHREA---AAYQKKTPYYS-EHDLERGTLKTD--VGAAIEHYNAHWNAVRFR |
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General information:
TITO was launched using:
| RESULT:
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Template: 2V84.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -91132 for 2535 contacts (-35.9/contact) +
2D Compatibility (PS) -32513 + (NN) -16263 + (LL) 5360
1D Compatibility (HY) -16400 + (ID) 2650
Total energy: -153598.0 ( -60.59 by residue)
QMean score : 0.368
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