Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQRIVIVGGGVGGTMLANLLVVRLYPEILGGEVQVLLISDSPDHYY-KPAFMYVAFEQ-FFLEDLKRPQRSLLRPEVMFQL-DRVDRFDFPRQELQTRSGRRHGYDYLVIATGCVPAPERIEGLK-EAGDHFYQYQPARRLAERLASLESGRVFITVSFPRTPNVPHQCGIAPVETTLMLDDYLRRRGVRERVEIVYTYPTTAQLLRNCLFLQ---RPTCEILPSLFEQRGIRFQRGFTLARVDPERR--IAYSEEGDEQPFDLLMATPPIHAVD-AVRECGLPQAAADEGWLPTNHETLQVYGVDRVYTLGDTVDLPV-------SKAGGACHNQAPVVASNIAAEIRLGK-PCAIYDGR-VQAVAQMGLNAGMPLWYDYRHDVKPTPPTKLGGLLRQGFNRGLYWAVARGML |
| 3EF6 Chain:A ((3-336)) | -THVAIIGNGVGGFTTAQALRAEG------FEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAEADWYGEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRARTMALPGSQLPGVVTLRTYGDVQVLRDSWT--SATRLLIVG------G-----GLIGCEVATTARK----LGL----SVTILEAGDE------LLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGAEPADQLARQAGLA---C-DRGVIVDHC-GATL-AKGVFAVGDVASWPLRAGGRRSLETYMNAQRQAAAVAAAILGKNVSAPQLPVSWTEIAGHRMQMAGDIEG---------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3EF6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -234835 for 2685 contacts (-87.5/contact) +
2D Compatibility (PS) -33024 + (NN) -12667 + (LL) 4600
1D Compatibility (HY) -2800 + (ID) 2850
Total energy: -281576.0 ( -104.87 by residue)
QMean score : 0.426
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