Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKPHLIYYVATSLDGFIARPDGSVDWLDRFA-EGGNDHGYNGFYQGIDGLLMGRGTYDIVRG-FG--DWPYPGKPCQVLTRNPRESAVEGVELRHDTPQEGLARLGEQGCRRVWLAGGGSLAGSCLAAGLLDEVIVSVIPQLLGAGIPLFAGG-RERRLQLLEQHGYNSGIVQMRYQVIAEDDPQ
3JTW Chain:A ((3-178))
-ARKVILFIAMSIDNYIADDQGAVDWLEKNVHGTESDDSYEKMYSKIDTVIMGRTTYEQVTQKLSPEKYVYADRQTYIVTSHLGEDT-DKIKYWKQSPVELVKRIQKEKGKDVWIVGGAKIIDPLVQANLIDTYILTTVPIFLGSGIRLFDRLEEQVPVRLIDVYQK-NELVYSIYQRG------
General information:
TITO was launched using:
RESULT:
Template:
3JTW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111772 for 1251 contacts (-89.3/contact) +
2D Compatibility (PS) -18376 + (NN) -4181 + (LL) 396
1D Compatibility (HY) -17200 + (ID) 2350
Total energy: -153483.0 ( -122.69 by residue)
QMean score : 0.373
(partial model without unconserved sides chains):
PDB file :
Tito_3JTW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JTW-query.scw
PDB file :
Tito_Scwrl_3JTW.pdb
: