Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGPERITLAMTGASGAQYGLRLLDCLVQEEREVHFLISKAAQLVMATETDVALPAKPQAMQAFLTEYCGAAAGQIRVFGQNDWMAPPASGSSA--PNAMVICPCSTGTLSAVATGACNNLIERAADVALKERRPLVLVPR---EAPFSSIHLENMLKLSNLGAVILPAAPGFYHQPQSVEDLVDFVVARILNTLGIPQDMLPRWGEQHLVSDE
2EJB Chain:A ((1-183))
---MQKIALCITGASGVIYGIKLLQVLEELDFSVDLVISRNAKVVLK-------EEV----L--------KGLKNVRIHEENDFTSPLASGSRLVHYRGVYVVPCSTNTLSCIANGINKNLIHRVGEVALKERVPLVLLVREAPYNEIHLENMLKITR---MGGVVVPASPAFYHKPQSIDDMINFVVGKLLDVLRIEHNL-------------
General information:
TITO was launched using:
RESULT:
Template:
2EJB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -146252 for 1416 contacts (-103.3/contact) +
2D Compatibility (PS) -18861 + (NN) -16438 + (LL) 2392
1D Compatibility (HY) -19200 + (ID) 3350
Total energy: -201709.0 ( -142.45 by residue)
QMean score : 0.543
(partial model without unconserved sides chains):
PDB file :
Tito_2EJB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2EJB-query.scw
PDB file :
Tito_Scwrl_2EJB.pdb
: