Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKHPGDFGADAQGAMNKALELFRKDMASNYKELGFQG
1YCB Chain:B ((1-153))
-GLSDGEWQLVLNVWGKVEADVAGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGNTTLTALGGILKKKGHHEAELTPLAQSHATKHKIPVKYLEFISEAIIQVLQSKHPGDFGADAQGAMSKALELFRNDMAAKYKELGFQG
General information:
TITO was launched using:
RESULT:
Template:
1YCB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65067 for 1146 contacts (-56.8/contact) +
2D Compatibility (PS) -16367 + (NN) -10274 + (LL) 208
1D Compatibility (HY) -17200 + (ID) 7100
Total energy: -115800.0 ( -101.05 by residue)
QMean score : 0.577
(partial model without unconserved sides chains):
PDB file :
Tito_1YCB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YCB-query.scw
PDB file :
Tito_Scwrl_1YCB.pdb
: