Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKP
4ITR Chain:D ((3-136))
--TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKP
General information:
TITO was launched using:
RESULT:
Template:
4ITR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66271 for 940 contacts (-70.5/contact) +
2D Compatibility (PS) -14116 + (NN) -5731 + (LL) 328
1D Compatibility (HY) -20400 + (ID) 6700
Total energy: -112890.0 ( -120.10 by residue)
QMean score : 0.450
(partial model without unconserved sides chains):
PDB file :
Tito_4ITR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ITR-query.scw
PDB file :
Tito_Scwrl_4ITR.pdb
: