Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRCVLL
1A4R Chain:B ((1-190))
MQTIKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRCVL-
General information:
TITO was launched using:
RESULT:
Template:
1A4R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -143029 for 1514 contacts (-94.5/contact) +
2D Compatibility (PS) -20198 + (NN) -9724 + (LL) 176
1D Compatibility (HY) -27600 + (ID) 9450
Total energy: -209825.0 ( -138.59 by residue)
QMean score : 0.706
(partial model without unconserved sides chains):
PDB file :
Tito_1A4R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1A4R-query.scw
PDB file :
Tito_Scwrl_1A4R.pdb
: