Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKLNSSDDGTQGCMGLPCVVM
4M1O Chain:C ((2-168))
MTEYKLVVVGACGVGKSALTIQLIQNHFV---------SYRKQVVIDGETSLLDILDTAG-------RDQYMRTGEGFLLVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHK----------------------
General information:
TITO was launched using:
RESULT:
Template:
4M1O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112575 for 1242 contacts (-90.6/contact) +
2D Compatibility (PS) -16980 + (NN) -8303 + (LL) 1760
1D Compatibility (HY) -19200 + (ID) 6700
Total energy: -161998.0 ( -130.43 by residue)
QMean score : 0.532
(partial model without unconserved sides chains):
PDB file :
Tito_4M1O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M1O-query.scw
PDB file :
Tito_Scwrl_4M1O.pdb
: