Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKLSVFFIFLFCSIATAAESLPDLKIEKLDEGVYVHTSFEEVNGWGVVPKHGLVVLVNAEAYLIDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWLNSRSIPTYASELTNELLKKDGKVQATNSFSGVNYWLVKNKIEVFYPGPGHTPDNVVVWLPERKILFGGCFIKPYGLGNLGDANIEAWPKSAKLLKSKYGKAKLVVPSHSEVGDASLLKLTLEQAVKGLNESKKPSKPSN
1WUP Chain:C ((3-219))
--------------------SLPDLKIEKLDEGVYVHTSFEEVNGWGVVPKHGLVVLVNAEAYLIDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSESTGGIEWLNSRSIPTYASELTNELLKKDGKVQATNSFSGVNYWLVKNKIEVFYPGPGHTPDNVVVWLPERKILFGGCFIKPYGLGNLGDANIEAWPKSAKLLKSKYGKAKLVVPSHSEVGDASLLKLTLEQAVKGLNE---------
General information:
TITO was launched using:
RESULT:
Template:
1WUP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100402 for 1997 contacts (-50.3/contact) +
2D Compatibility (PS) -24065 + (NN) -15556 + (LL) 2060
1D Compatibility (HY) -31200 + (ID) 10800
Total energy: -179963.0 ( -90.12 by residue)
QMean score : 0.636
(partial model without unconserved sides chains):
PDB file :
Tito_1WUP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WUP-query.scw
PDB file :
Tito_Scwrl_1WUP.pdb
: