Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLPTAQEVQGLMARYIELVDVGDIEAIVQMYADDATVEDPFGQPPIHGREQIAAFYRQGLGGGKVRACLTGPVRASHNGCGAMPFRVEMVWNGQPCALDVIDVMRFDEHGRIQTMQAYWSEVNLSVREPQ
2PZV Chain:D ((2-127))
-NLPTAQEVQGLMARYIELVDVGDIEAIVQMYADDATVENPFGQPPIHGREQIAAFYRQGL---KVRACLTGPVRASHNGCGAMPFRVEMVWNGQPCALDVIDVMRFDEHGRIQTMQAYWSEVNLSV----
General information:
TITO was launched using:
RESULT:
Template:
2PZV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83483 for 909 contacts (-91.8/contact) +
2D Compatibility (PS) -13712 + (NN) -4845 + (LL) -124
1D Compatibility (HY) -18400 + (ID) 6100
Total energy: -126664.0 ( -139.34 by residue)
QMean score : 0.484
(partial model without unconserved sides chains):
PDB file :
Tito_2PZV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PZV-query.scw
PDB file :
Tito_Scwrl_2PZV.pdb
: