Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGNASNDSQSEDCETRQWLPPGESPAISSVMFSAGVLGNLIALALLARRWRGDVGCSAGRRSSLSLFHVLVTELVFTDLLGTCLISPVVLASYARNQTLVALAPESRACTYFAFAMTFFSLATMLMLFAMALERYLSIGHPYFYQRRVSRSGGLAVLPVIYAVSLLFCSLPLLDYGQYVQYCPGTWCFIRHGRTA-Y-LQLYATLLLLLIVSVLACNFSVILNLIRMHRRSRRSRCGPSL--------------------------G------------------SGRGG----------------------------------------------------------P------------------GARR-------------RGERVSMAEETDHLILLAIMTITFAVCSLPFTIFAYMNETSSR--KEKWDLQALRFLSINSIIDPWVFAILRPPVLRLMRSVLCCRISLRTQDATQTSCSTQSDASKQADL |
| 3RZE Chain:A ((10-443)) | ----------------------PLVVVLSTICLVTVGLNLLVLYAVRSE-----------RKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLL-MSKWSL---GRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFLWVIPIL-GWNH----RREDKCETDFYDVTWFKVMTAIINFYLPTLLMLWFYAKIYKAVRQHCNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYLHMNRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKNCCNEHLHMFTIWLGYINSTLNPLIYPLCNENFKKTFKRILHI-------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3RZE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -233775 for 2050 contacts (-114.0/contact) +
2D Compatibility (PS) -29919 + (NN) -10461 + (LL) 3028
1D Compatibility (HY) -18400 + (ID) 2100
Total energy: -291627.0 ( -142.26 by residue)
QMean score : 0.396
|
|
|