Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVTCGDVTSAVAPCMSYASGK--AS-------------------APSGACCSGVRTLNAKASTPADRKAACNCLKNLAGS----G-I-------SMGNAASIPGKCGVSVSIPISTKTNCNNLH
1PSY Chain:A ((25-122))
--------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV--RCMRQT--------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38425 for 483 contacts (-79.6/contact) +
2D Compatibility (PS) -6417 + (NN) -708 + (LL) 1056
1D Compatibility (HY) -4400 + (ID) 750
Total energy: -49644.0 ( -102.78 by residue)
QMean score : 0.291
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: