Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VVQCGQVTQLMAPCMPYLSGAPGMTPYGICCNSLGVLNQLAASTADRVAACNCVKAAASGGFPAVDFSRAAALPAACGLAINFAVTPNMDCNQVTDEP
1SIY Chain:A ((1-91))
-MTCGQVQGNLAQCIGFLQKGG--VVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAG-AVRGINPNNAEALPGKCGVNIPYKISTSTNCNSIN---
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82587 for 700 contacts (-118.0/contact) +
2D Compatibility (PS) -9148 + (NN) -3188 + (LL) -56
1D Compatibility (HY) -6800 + (ID) 1450
Total energy: -103229.0 ( -147.47 by residue)
QMean score : 0.363
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: