Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVQCGQVMQLMAPCMPYLAGA--P-G-M-T---------------PYGICCDSLGVLNRMAPAPADRVAVCNCVKDAAAGFP------A----VDFSRASALPAACGLSISFTIAPNMDCNQVTEELRI
1PSY Chain:A ((25-116))
--------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV---------------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45253 for 431 contacts (-105.0/contact) +
2D Compatibility (PS) -5741 + (NN) 2627 + (LL) 2860
1D Compatibility (HY) -1200 + (ID) 600
Total energy: -47307.0 ( -109.76 by residue)
QMean score : 0.257
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: