Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ATACDATQLTPCAGAIIGSSPPTAACCSRLKEQQPCLCTYARDPNLQRYVNSPNGKKAMAACKVPVPSC-----------
2KBR Chain:A ((1-80))
MDRKVAREFRHKVDFLIENDAEKDYLYDVLRMYHQTMDVAVLVGDLKLVINEPSRLPLFDAIRPLIPLKHQVEYDQLTPR
General information:
TITO was launched using:
RESULT:
Template:
2KBR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20517 for 406 contacts (-50.5/contact) +
2D Compatibility (PS) -6956 + (NN) 2021 + (LL) 0
1D Compatibility (HY) -2400 + (ID) 400
Total energy: -28252.0 ( -69.59 by residue)
QMean score : 0.219
(partial model without unconserved sides chains):
PDB file :
Tito_2KBR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KBR-query.scw
PDB file :
Tito_Scwrl_2KBR.pdb
: