Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VCDMDNDDFMACQPAAAATTDPQPAPSEACCATLGKA--DLRCLCSYKNSPWL----SLYNID-----PKRAMELPAKCGLTTPPDC
3OB4 Chain:A ((429-488))
---------------------------ERCCNELNEFENNQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLRAPQRC
General information:
TITO was launched using:
RESULT:
Template:
3OB4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12596 for 256 contacts (-49.2/contact) +
2D Compatibility (PS) -5162 + (NN) -2177 + (LL) 1012
1D Compatibility (HY) -2400 + (ID) 750
Total energy: -22073.0 ( -86.22 by residue)
QMean score : 0.275
(partial model without unconserved sides chains):
PDB file :
Tito_3OB4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OB4-query.scw
PDB file :
Tito_Scwrl_3OB4.pdb
: