Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VCNMSNDEFMKCQPAAAATSN---PTTNPSAGCCSALSHADLNCLCSYKNSPWLS-----IYN---------IDPNRAMQLPAKCGLTMPANC
1HSS Chain:A ((14-106))
-----VPALPACRPLLRLQCNGSQVPEAVLRDCCQQLAHISEWCRCGALYSMLDSMYKEH---GAFPRCRREVVKLTAASITAVCRLPIVVD-
General information:
TITO was launched using:
RESULT:
Template:
1HSS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17376 for 442 contacts (-39.3/contact) +
2D Compatibility (PS) -6795 + (NN) 732 + (LL) 620
1D Compatibility (HY) -2800 + (ID) 750
Total energy: -26369.0 ( -59.66 by residue)
QMean score : 0.115
(partial model without unconserved sides chains):
PDB file :
Tito_1HSS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HSS-query.scw
PDB file :
Tito_Scwrl_1HSS.pdb
: