Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
EDCTVDLKG--LIRECKQYVMFPAS--PK----IT------PSSACCSVVQKVNSPCLCSKVTKEIEKVV--------CMDK----VVYVADYYKNPLKPGSDCGSYHVPSQRR
1SM7 Chain:A ((4-103))
-KCQREFQQEQHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQEDQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIGT-------------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33412 for 515 contacts (-64.9/contact) +
2D Compatibility (PS) -7270 + (NN) -206 + (LL) 336
1D Compatibility (HY) -1600 + (ID) 500
Total energy: -42652.0 ( -82.82 by residue)
QMean score : 0.262
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: