Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QNICPRVNRIVTPCVAYGLGRAPIAPCCRALNDLRFVNTRNLRRAACRCLVGVVNRNP----GLR----RNPRFQNIPRDCRNTFVRPFWWRPRIQCGRIN
3OB4 Chain:A ((428-484))
-----------------------QERCCNELNEFEN-----NQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLRA----------------
General information:
TITO was launched using:
RESULT:
Template:
3OB4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20814 for 258 contacts (-80.7/contact) +
2D Compatibility (PS) -5072 + (NN) -1862 + (LL) 2472
1D Compatibility (HY) -1600 + (ID) 550
Total energy: -27426.0 ( -106.30 by residue)
QMean score : 0.252
(partial model without unconserved sides chains):
PDB file :
Tito_3OB4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OB4-query.scw
PDB file :
Tito_Scwrl_3OB4.pdb
: