Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LSCSQVTSGLAPCLPYLQG----RG---P----------------LGGCCSGVKDLLAAAKTPADRKTACTCMKSTANSIK------GI----DAGKAASIPATCGVNIPYKISPSTDCTKVE
1PSY Chain:A ((25-117))
-------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVR---------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24166 for 423 contacts (-57.1/contact) +
2D Compatibility (PS) -6088 + (NN) -540 + (LL) 1940
1D Compatibility (HY) -4000 + (ID) 1000
Total energy: -33854.0 ( -80.03 by residue)
QMean score : 0.214
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: