Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LTCGQVTAGLAPCLPYLQG----RG---P----------------LGGCCGGVKGLLGSAKTTADRKTACTCLKSAANAIK------GI----DLNKAAGIPSVCKVNIPYKISPSTDCSTVQ
1PSY Chain:A ((25-118))
-------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVRC--------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25327 for 437 contacts (-58.0/contact) +
2D Compatibility (PS) -5969 + (NN) -42 + (LL) 1300
1D Compatibility (HY) -3600 + (ID) 950
Total energy: -34588.0 ( -79.15 by residue)
QMean score : 0.179
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: