Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LTCGQVTSSLAPCFPYLMN---RGP--------------LGGCCGGVKSLLGQAQTTADRQTACTCLKSAASSFT--G-L-------DLGKAAGLPSACSVNIPYKISPSTDCSKVQ
1SM7 Chain:A ((13-101))
-------QHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQE--------DQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQI-------------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46255 for 407 contacts (-113.6/contact) +
2D Compatibility (PS) -6081 + (NN) 440 + (LL) 1656
1D Compatibility (HY) -2800 + (ID) 850
Total energy: -53890.0 ( -132.41 by residue)
QMean score : 0.354
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: