Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AITCGQVSSAIAPCLSYARGTGP-APSASCCSGVRNLKSAASTAADRRAACNCLKNA-ARGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSR
2RKN Chain:A ((3-75))
-DLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHA--------DFACLCGYKNSPWLGS-FGVDPELASALPKQCGLANAP----------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28597 for 483 contacts (-59.2/contact) +
2D Compatibility (PS) -7547 + (NN) -2191 + (LL) 1328
1D Compatibility (HY) -1600 + (ID) 750
Total energy: -39357.0 ( -81.48 by residue)
QMean score : 0.238
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: