Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ASSCNPSALSACAPALF--GRAVTLGCCASLRAQQPCLCQYKRDPANRAYVNGPAAQRFTRACGL------TQMKC-----------------------
1NKR Chain:? ((102-200))
IGLYEKPSLSAQPGPTVLAGENVTLSCSSRSSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCFGSFHDSPYEWSKSSDPLLVSVT
General information:
TITO was launched using:
RESULT:
Template:
1NKR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25868 for 409 contacts (-63.2/contact) +
2D Compatibility (PS) -6900 + (NN) 722 + (LL) 0
1D Compatibility (HY) -1200 + (ID) 650
Total energy: -33896.0 ( -82.88 by residue)
QMean score : 0.194
(partial model without unconserved sides chains):
PDB file :
Tito_1NKR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NKR-query.scw
PDB file :
Tito_Scwrl_1NKR.pdb
: