Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ATICNIDTSKLAECLPAVS----GR-SPPP-------PTKACCTALLSADLHCLCNYKSAL-P-------AF-----GINPALAMALPKKCGGSLPPNCKVDAEP
2LVF Chain:A ((16-106))
--------QMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS-PMRCP-----
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15960 for 373 contacts (-42.8/contact) +
2D Compatibility (PS) -7320 + (NN) -8393 + (LL) 956
1D Compatibility (HY) -2000 + (ID) 750
Total energy: -33467.0 ( -89.72 by residue)
QMean score : 0.444
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: