Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QSTICKMPVAGLMSCKPSVT----PPNPT----------APSADCCSALSHADLNCLCSYKNSNLLP-----SLGI-----DPKLAMQLPGKCKLPHPANC
1SM7 Chain:A ((14-104))
----------HLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQEDQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIGTC
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26505 for 427 contacts (-62.1/contact) +
2D Compatibility (PS) -6803 + (NN) -42 + (LL) 872
1D Compatibility (HY) -2400 + (ID) 700
Total energy: -35578.0 ( -83.32 by residue)
QMean score : 0.282
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: