Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QVTLCGMTKEGFASCKPSVQT---G-VNPLP-------PSYSCCSALEKADLSCLCFFKKNYPKM---L-TDN-----NIDPNLAMQLPAKCNMAGSFSCK
2LVF Chain:A ((16-106))
---------QMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS-PMRCP
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20553 for 413 contacts (-49.8/contact) +
2D Compatibility (PS) -7270 + (NN) -1003 + (LL) 576
1D Compatibility (HY) -2400 + (ID) 800
Total energy: -31450.0 ( -76.15 by residue)
QMean score : 0.291
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: