Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QSICNVSISGLTSCSPAVT----PPNPA----------PPTSACCSALSHADLRCLCSYKNSTLL-----PSLGI-----DQKLPLKLPEKCRLPHRAPC
1SM7 Chain:A ((14-104))
---------HLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQEDQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIGTC
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30091 for 422 contacts (-71.3/contact) +
2D Compatibility (PS) -6692 + (NN) 87 + (LL) 612
1D Compatibility (HY) -2800 + (ID) 650
Total energy: -39534.0 ( -93.68 by residue)
QMean score : 0.391
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: