Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DQQVSACQNDIDA--LWRSCKQFVQKE---GPK----MPP------SEDCCKTIKALDAHASCICDYVGSPDARNKL--------DLDK----VFFVTKQCGVTVPKGCGSKQD
1SM7 Chain:A ((2-105))
---PQKCQREFQQEQHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQED--QVCVCPTL-KQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIGTCP----
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38499 for 546 contacts (-70.5/contact) +
2D Compatibility (PS) -7625 + (NN) 1432 + (LL) 260
1D Compatibility (HY) -3200 + (ID) 800
Total energy: -48432.0 ( -88.70 by residue)
QMean score : 0.453
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: