Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ITCGQVNSAVGPCLTYARGG---AG-------------------PSAACCSGVRSLKAAASNTADRRTACNCLKNAARGIK--G-L-------NAGNAASIPSKCGVSVPYTISASIHCSRVS
1PSY Chain:A ((25-117))
-------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVR---------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25660 for 444 contacts (-57.8/contact) +
2D Compatibility (PS) -6300 + (NN) -2039 + (LL) 1984
1D Compatibility (HY) -4000 + (ID) 900
Total energy: -36915.0 ( -83.14 by residue)
QMean score : 0.273
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: