Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------AGACGKTSPDQEAMK---LAPCAMAAQDAK-----------------AAVSDSCCAQVRSIGQNPSCLCSVMLSDMA---------KASGIKAEIAITIPKRCNIANRPVGYKCGDYTLP----
1W2Q Chain:A ((1-127))
GPMRRERGRQGDSSSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEMENTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQ---RCDLDVSGGRCS
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28856 for 528 contacts (-54.7/contact) +
2D Compatibility (PS) -9965 + (NN) -8809 + (LL) 112
1D Compatibility (HY) -3200 + (ID) 750
Total energy: -51468.0 ( -97.48 by residue)
QMean score : 0.496
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: