Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLCDIDDKGLADCKPSVT----QPNPV----------DPSPDCCEALKGADLACLCSYKNSMWLPS-----FGI-----DPMLALSLPPKCNLQMPPNC
1SM7 Chain:A ((14-104))
---------HLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQEDQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIGTC
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23091 for 443 contacts (-52.1/contact) +
2D Compatibility (PS) -6906 + (NN) -927 + (LL) 532
1D Compatibility (HY) -1200 + (ID) 750
Total energy: -32342.0 ( -73.01 by residue)
QMean score : 0.225
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: