Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QTICNMPASGLMACKPAVT----PPNP----------PPPTSTCCSALSQADMRCLCSYKNSQLLP-----SLGI-----DPNLAMKLPSMCKLPHPANC
1SM7 Chain:A ((14-104))
---------HLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQEDQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIGTC
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30422 for 431 contacts (-70.6/contact) +
2D Compatibility (PS) -6828 + (NN) -149 + (LL) 536
1D Compatibility (HY) -2800 + (ID) 850
Total energy: -40513.0 ( -94.00 by residue)
QMean score : 0.313
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: