Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
TTNEPTVCNIALTKLNLCRPAVT----GQYPP----------PPTKECCGLMKQANLTCLCKFKEA-------LPAFEI-----DPARAFALPKKCNLRTPPQCKV
1SM7 Chain:A ((14-106))
-------------HLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQEDQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIGTCPF
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15043 for 396 contacts (-38.0/contact) +
2D Compatibility (PS) -6762 + (NN) -760 + (LL) 784
1D Compatibility (HY) -2000 + (ID) 700
Total energy: -24481.0 ( -61.82 by residue)
QMean score : 0.425
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: