Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QAPAPEPTAEAPGPDCFTNLL---SLSDCLTYVEA---GSNLTK--------PEKPCCPELAGLVESTPQCLCYLLDKNATS---S---Y-G--FNIDMNRALNLPTVCKVSTPPVSLCSG
2LVF Chain:A ((5-106))
------------QEECREQMQRQQMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGM---DESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS-P--MRCP-
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24405 for 473 contacts (-51.6/contact) +
2D Compatibility (PS) -8179 + (NN) 491 + (LL) 596
1D Compatibility (HY) -3600 + (ID) 1100
Total energy: -36197.0 ( -76.53 by residue)
QMean score : 0.227
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: