Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGCDIDLLLPCLNASRDPRV------K-----------PDKRCCDAIRQFLPPRKQKSAIDCLCRLATSKEAVAL----K--I---NLSAAIAIPQKCGIKFEQRFYCQG
1W2Q Chain:A ((24-112))
------NLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEME------NTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFR---------
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35302 for 404 contacts (-87.4/contact) +
2D Compatibility (PS) -6260 + (NN) 832 + (LL) 832
1D Compatibility (HY) -3200 + (ID) 600
Total energy: -43698.0 ( -108.16 by residue)
QMean score : 0.290
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: