Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QPSPNPSCGAQLS---QLGPCARYSVPPMP---GQALP-------APGPECCSALGSVSRDCACGAID----------------------IINSLPAKCGLPR-ISCQ
1SM7 Chain:A ((1-104))
---QPQKCQREFQQEQHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQEDQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIGTC-
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44785 for 437 contacts (-102.5/contact) +
2D Compatibility (PS) -6959 + (NN) -3059 + (LL) 72
1D Compatibility (HY) -4800 + (ID) 650
Total energy: -60181.0 ( -137.71 by residue)
QMean score : 0.421
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: