Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--AGGCNAGQLSVCAVAITSGSPPSAECCSNLRAQQGCLCQYAKDP-NYGRY--------ISSPYARQTVASCGIPVPKC------------------------
1U78 Chain:A ((2-104))
PRGSALSDTERAQ-LDVMKLLNVSLHEMSRKISRSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKTARDIRNELQLSASKRTILNVIKRSG
General information:
TITO was launched using:
RESULT:
Template:
1U78.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23684 for 359 contacts (-66.0/contact) +
2D Compatibility (PS) -7100 + (NN) -3368 + (LL) 56
1D Compatibility (HY) -400 + (ID) 500
Total energy: -34996.0 ( -97.48 by residue)
QMean score : 0.391
(partial model without unconserved sides chains):
PDB file :
Tito_1U78.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1U78-query.scw
PDB file :
Tito_Scwrl_1U78.pdb
: