Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VCDMDNDDFMACQPAAAATTSPTPPDPSAACCATLGKADLKCLCSYKKSPWLSLY----N-------IDPKRAMELPAKCGLSPPADC
2LVF Chain:A ((45-105))
--------------------------HMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS-PMRC
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10340 for 263 contacts (-39.3/contact) +
2D Compatibility (PS) -5380 + (NN) -4116 + (LL) 660
1D Compatibility (HY) -1600 + (ID) 650
Total energy: -21426.0 ( -81.47 by residue)
QMean score : 0.288
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: