Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
WTVNIPTPQSSCPLANPLSLNVCVDLLGLVHVVLGNPSTVECCDIINGLGID-------ATVCLCTAIHLKVLGL-NVDIPLALKLLVTCGRELP----NGLTC
1AFH Chain:A ((7-89))
---------------VASAIAPCISYARG----QGSGPSAGCCSGVRSLNNAARTTADRRAACNC--LKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDC
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73270 for 519 contacts (-141.2/contact) +
2D Compatibility (PS) -7479 + (NN) -4608 + (LL) 1412
1D Compatibility (HY) 800 + (ID) 650
Total energy: -83795.0 ( -161.45 by residue)
QMean score : 0.404
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: