Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QQQPANCNGQLN--QLIPCLSYVQGQ----A------TQP-----------AQSCCSGLKSIAGSNPACLCSLISANA------G----SIPGINSTLALELPAKCNLQGLNPSLCSVFISGFLPLR
1PSY Chain:A ((16-116))
----QQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV---RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV-------------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35954 for 454 contacts (-79.2/contact) +
2D Compatibility (PS) -6894 + (NN) -1666 + (LL) 1016
1D Compatibility (HY) -3200 + (ID) 850
Total energy: -47548.0 ( -104.73 by residue)
QMean score : 0.349
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: