Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DDDATLDCDSQVNG-LAGNCMTAVLIG---T----K----P-----------SSKCCKFVRSAQLDCLCPKITKDVTKMITE---------RLLSTALKIAKQCNWELPHNYQCGSYTFP
1PSY Chain:A ((16-116))
-----QQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVRDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV--------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31194 for 483 contacts (-64.6/contact) +
2D Compatibility (PS) -7391 + (NN) -3705 + (LL) 276
1D Compatibility (HY) -1200 + (ID) 750
Total energy: -43964.0 ( -91.02 by residue)
QMean score : 0.473
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: